phastCons100way.UCSC.hg19

DOI: 10.18129/B9.bioc.phastCons100way.UCSC.hg19    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see phastCons100way.UCSC.hg19.

UCSC phastCons conservation scores for hg19

Bioconductor version: 3.11

Store UCSC phastCons conservation scores for the human genome (hg19) calculated from multiple alignments with other 99 vertebrate species.

Author: Robert Castelo [aut, cre]

Maintainer: Robert Castelo <robert.castelo at upf.edu>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("phastCons100way.UCSC.hg19")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual
Text		NEWS

Details

biocViews	AnnotationData, Genetics, GenomicScores, Homo_sapiens
Version	3.7.2
License	Artistic-2.0
Depends	R (>= 3.0.0), GenomicScores(>= 1.3.19)
Imports	utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb, BSgenome
LinkingTo
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SystemRequirements
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URL
Depends On Me
Imports Me	RareVariantVis
Suggests Me	ATACseqQC, GenomicScores, VariantFiltering
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	phastCons100way.UCSC.hg19_3.7.2.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Package Short Url	https://bioconductor.org/packages/phastCons100way.UCSC.hg19/
Package Downloads Report	Download Stats