ANF

This is the development version of ANF; for the stable release version, see ANF.

Affinity Network Fusion for Complex Patient Clustering

Bioconductor version: Development (3.21)

This package is used for complex patient clustering by integrating multi-omic data through affinity network fusion.

Author: Tianle Ma, Aidong Zhang

Maintainer: Tianle Ma <tianlema at buffalo.edu>

Citation (from within R, enter citation("ANF")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ANF")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ANF")

Cancer Patient Clustering with ANF	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Clustering, GraphAndNetwork, Network, Software
Version	1.29.0
In Bioconductor since	BioC 3.6 (R-3.4) (7 years)
License	GPL-3
Depends
Imports	igraph, Biobase, survival, MASS, stats, RColorBrewer
System Requirements
URL

Suggests	ExperimentHub, SNFtool, knitr, rmarkdown, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	HarmonizedTCGAData
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ANF_1.29.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/ANF
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ANF
Bioc Package Browser	https://code.bioconductor.org/browse/ANF/
Package Short Url	https://bioconductor.org/packages/ANF/
Package Downloads Report	Download Stats