CytoPipelineGUI
This is the development version of CytoPipelineGUI; for the stable release version, see CytoPipelineGUI.
GUI's for visualization of flow cytometry data analysis pipelines
Bioconductor version: Development (3.21)
This package is the companion of the `CytoPipeline` package. It provides GUI's (shiny apps) for the visualization of flow cytometry data analysis pipelines that are run with `CytoPipeline`. Two shiny applications are provided, i.e. an interactive flow frame assessment and comparison tool and an interactive scale transformations visualization and adjustment tool.
Author: Philippe Hauchamps [aut, cre] (ORCID:
Maintainer: Philippe Hauchamps <philippe.hauchamps at uclouvain.be>
citation("CytoPipelineGUI")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("CytoPipelineGUI")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CytoPipelineGUI")| CytoPipelineGUI : visualization of Flow Cytometry Data Analysis Pipelines run with CytoPipeline | HTML | R Script |
| Demonstration of the CytoPipeline R package suite functionalities | HTML | R Script |
| Reference Manual |
Details
| biocViews | FlowCytometry, GUI, ImmunoOncology, Preprocessing, QualityControl, ShinyApps, Software, Visualization, WorkflowStep |
| Version | 1.5.0 |
| In Bioconductor since | BioC 3.18 (R-4.3) (1 year) |
| License | GPL-3 |
| Depends | R (>= 4.4), CytoPipeline |
| Imports | shiny, plotly, ggplot2, flowCore |
| System Requirements | |
| URL | https://uclouvain-cbio.github.io/CytoPipelineGUI |
| Bug Reports | https://github.com/UCLouvain-CBIO/CytoPipelineGUI/issues |
See More
| Suggests | testthat (>= 3.0.0), vdiffr, diffviewer, knitr, rmarkdown, BiocStyle, patchwork |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | CytoPipeline |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | CytoPipelineGUI_1.5.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/CytoPipelineGUI |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CytoPipelineGUI |
| Bioc Package Browser | https://code.bioconductor.org/browse/CytoPipelineGUI/ |
| Package Short Url | https://bioconductor.org/packages/CytoPipelineGUI/ |
| Package Downloads Report | Download Stats |