DNABarcodes
This package is for version 3.21 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see DNABarcodes.
A tool for creating and analysing DNA barcodes used in Next Generation Sequencing multiplexing experiments
Bioconductor version: Development (3.21)
The package offers a function to create DNA barcode sets capable of correcting insertion, deletion, and substitution errors. Existing barcodes can be analysed regarding their minimal, maximal and average distances between barcodes. Finally, reads that start with a (possibly mutated) barcode can be demultiplexed, i.e., assigned to their original reference barcode.
Author: Tilo Buschmann <tilo.buschmann.ac at gmail.com>
Maintainer: Tilo Buschmann <tilo.buschmann.ac at gmail.com>
citation("DNABarcodes")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("DNABarcodes")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DNABarcodes")| DNABarcodes | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Preprocessing, Sequencing, Software |
| Version | 1.37.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (9 years) |
| License | GPL-2 |
| Depends | Matrix, parallel |
| Imports | Rcpp (>= 0.11.2), BH |
| System Requirements | |
| URL |
See More
| Suggests | knitr, BiocStyle, rmarkdown |
| Linking To | Rcpp, BH |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | DNABarcodes_1.37.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/DNABarcodes |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DNABarcodes |
| Bioc Package Browser | https://code.bioconductor.org/browse/DNABarcodes/ |
| Package Short Url | https://bioconductor.org/packages/DNABarcodes/ |
| Package Downloads Report | Download Stats |