FeatSeekR
This is the development version of FeatSeekR; for the stable release version, see FeatSeekR.
FeatSeekR an R package for unsupervised feature selection
Bioconductor version: Development (3.21)
FeatSeekR performs unsupervised feature selection using replicated measurements. It iteratively selects features with the highest reproducibility across replicates, after projecting out those dimensions from the data that are spanned by the previously selected features. The selected a set of features has a high replicate reproducibility and a high degree of uniqueness.
Author: Tuemay Capraz [cre, aut] (ORCID:
Maintainer: Tuemay Capraz <tuemay.capraz at embl.de>
citation("FeatSeekR")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("FeatSeekR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("FeatSeekR")| `FeatSeekR` user guide | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | FeatureExtraction, MassSpectrometry, Software, StatisticalMethod |
| Version | 1.7.0 |
| In Bioconductor since | BioC 3.17 (R-4.3) (1.5 years) |
| License | GPL-3 |
| Depends | |
| Imports | pheatmap, MASS, pracma, stats, SummarizedExperiment, methods |
| System Requirements | |
| URL | https://github.com/tcapraz/FeatSeekR |
| Bug Reports | https://github.com/tcapraz/FeatSeekR/issues |
See More
| Suggests | rmarkdown, knitr, BiocStyle, DmelSGI, testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | FeatSeekR_1.7.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/FeatSeekR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/FeatSeekR |
| Bioc Package Browser | https://code.bioconductor.org/browse/FeatSeekR/ |
| Package Short Url | https://bioconductor.org/packages/FeatSeekR/ |
| Package Downloads Report | Download Stats |