GloScope

This is the development version of GloScope; for the stable release version, see GloScope.

Population-level Representation on scRNA-Seq data

Bioconductor version: Development (3.21)

This package aims at representing and summarizing the entire single-cell profile of a sample. It allows researchers to perform important bioinformatic analyses at the sample-level such as visualization and quality control. The main functions Estimate sample distribution and calculate statistical divergence among samples, and visualize the distance matrix through MDS plots.

Author: William Torous [aut, cre] (ORCID: ), Hao Wang [aut] (ORCID: ), Elizabeth Purdom [aut], Boying Gong [aut]

Maintainer: William Torous <wtorous at berkeley.edu>

Citation (from within R, enter citation("GloScope")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("GloScope")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GloScope")

GloScope	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DataRepresentation, QualityControl, RNASeq, Sequencing, SingleCell, Software
Version	1.5.0
In Bioconductor since	BioC 3.18 (R-4.3) (1 year)
License	Artistic-2.0
Depends	R (>= 4.4.0)
Imports	utils, stats, MASS, mclust, ggplot2, RANN, FNN, BiocParallel, mvnfast, SingleCellExperiment, rlang
System Requirements
URL
Bug Reports	https://github.com/epurdom/GloScope/issues

Suggests	BiocStyle, testthat (>= 3.0.0), knitr, rmarkdown, zellkonverter
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GloScope_1.5.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/GloScope
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GloScope
Bioc Package Browser	https://code.bioconductor.org/browse/GloScope/
Package Short Url	https://bioconductor.org/packages/GloScope/
Package Downloads Report	Download Stats