MuData
This is the development version of MuData; for the stable release version, see MuData.
Serialization for MultiAssayExperiment Objects
Bioconductor version: Development (3.21)
Save MultiAssayExperiments to h5mu files supported by muon and mudata. Muon is a Python framework for multimodal omics data analysis. It uses an HDF5-based format for data storage.
Author: Danila Bredikhin [aut, cre] (ORCID:
Maintainer: Danila Bredikhin <danila.bredikhin at embl.de>
citation("MuData")
):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("MuData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MuData")
Blood CITE-seq with MuData | HTML | R Script |
Cord Blood CITE-seq with MuData | HTML | R Script |
Getting started with MuDataMae | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | DataImport, Software |
Version | 1.11.0 |
In Bioconductor since | BioC 3.15 (R-4.2) (2.5 years) |
License | GPL-3 |
Depends | Matrix, S4Vectors, rhdf5 |
Imports | methods, stats, MultiAssayExperiment, SingleCellExperiment, SummarizedExperiment, DelayedArray |
System Requirements | |
URL | https://github.com/ilia-kats/MuData |
Bug Reports | https://github.com/ilia-kats/MuData/issues |
See More
Suggests | HDF5Array, rmarkdown, knitr, fs, testthat, BiocStyle, covr, SingleCellMultiModal, CiteFuse, scater |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | MuData_1.11.0.tar.gz |
Windows Binary (x86_64) | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/MuData |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MuData |
Bioc Package Browser | https://code.bioconductor.org/browse/MuData/ |
Package Short Url | https://bioconductor.org/packages/MuData/ |
Package Downloads Report | Download Stats |