RedisParam
This is the development version of RedisParam; for the stable release version, see RedisParam.
Provide a 'redis' back-end for BiocParallel
Bioconductor version: Development (3.21)
This package provides a Redis-based back-end for BiocParallel, enabling an alternative mechanism for distributed computation. The The 'manager' distributes tasks to a 'worker' pool through a central Redis server, rather than directly to workers as with other BiocParallel implementations. This means that the worker pool can change dynamically during job evaluation. All features of BiocParallel are supported, including reproducible random number streams, logging to the manager, and alternative 'load balancing' task distributions.
Author: Martin Morgan [aut, cre] (ORCID:
Maintainer: Martin Morgan <mtmorgan.bioc at gmail.com>
citation("RedisParam")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("RedisParam")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RedisParam")| RedisParam for Developers | HTML | R Script |
| Using RedisParam | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| INSTALL | Text |
Details
| biocViews | Infrastructure, Software |
| Version | 1.9.0 |
| In Bioconductor since | BioC 3.16 (R-4.2) (2 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.2.0), BiocParallel(>= 1.29.12) |
| Imports | methods, redux, withr, futile.logger |
| System Requirements | hiredis |
| URL |
See More
| Suggests | rmarkdown, knitr, testthat, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | RedisParam_1.9.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/RedisParam |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RedisParam |
| Bioc Package Browser | https://code.bioconductor.org/browse/RedisParam/ |
| Package Short Url | https://bioconductor.org/packages/RedisParam/ |
| Package Downloads Report | Download Stats |