biodbNcbi
This is the development version of biodbNcbi; for the stable release version, see biodbNcbi.
biodbNcbi, a library for connecting to NCBI Databases.
Bioconductor version: Development (3.21)
The biodbNcbi library provides access to the NCBI databases CCDS, Gene, Pubchem Comp and Pubchem Subst, using biodb package framework. It allows to retrieve entries by their accession number. Web services can be accessed for searching the database by name or mass.
Author: Pierrick Roger [aut, cre] (ORCID:
Maintainer: Pierrick Roger <pierrick.roger at cea.fr>
citation("biodbNcbi")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("biodbNcbi")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("biodbNcbi")| Introduction to the biodbNcbi package. | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, Infrastructure, Software |
| Version | 1.11.0 |
| In Bioconductor since | BioC 3.15 (R-4.2) (2.5 years) |
| License | AGPL-3 |
| Depends | R (>= 4.1) |
| Imports | biodb(>= 1.3.2), R6, XML, chk |
| System Requirements | |
| URL | https://github.com/pkrog/biodbNcbi |
| Bug Reports | https://github.com/pkrog/biodbNCbi/issues |
See More
| Suggests | roxygen2, BiocStyle, testthat (>= 2.0.0), devtools, knitr, rmarkdown, covr, lgr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | biodbNcbi_1.11.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/biodbNcbi |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/biodbNcbi |
| Bioc Package Browser | https://code.bioconductor.org/browse/biodbNcbi/ |
| Package Short Url | https://bioconductor.org/packages/biodbNcbi/ |
| Package Downloads Report | Download Stats |