derfinderPlot
This is the development version of derfinderPlot; for the stable release version, see derfinderPlot.
Plotting functions for derfinder
Bioconductor version: Development (3.21)
This package provides plotting functions for results from the derfinder package. This helps separate the graphical dependencies required for making these plots from the core functionality of derfinder.
Author: Leonardo Collado-Torres [aut, cre] (ORCID:
Maintainer: Leonardo Collado-Torres <lcolladotor at gmail.com>
citation("derfinderPlot")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("derfinderPlot")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | DifferentialExpression, ImmunoOncology, RNASeq, Sequencing, Software, Visualization |
| Version | 1.41.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (10 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.2) |
| Imports | derfinder(>= 1.1.0), GenomeInfoDb(>= 1.3.3), GenomicFeatures, GenomicRanges(>= 1.17.40), ggbio(>= 1.13.13), ggplot2, graphics, grDevices, IRanges(>= 1.99.28), limma, methods, plyr, RColorBrewer, reshape2, S4Vectors(>= 0.9.38), scales, utils |
| System Requirements | |
| URL | https://github.com/leekgroup/derfinderPlot |
| Bug Reports | https://support.bioconductor.org/t/derfinderPlot |
See More
| Suggests | biovizBase(>= 1.27.2), bumphunter(>= 1.7.6), derfinderData(>= 0.99.0), sessioninfo, knitr (>= 1.6), BiocStyle(>= 2.5.19), org.Hs.eg.db, RefManageR, rmarkdown (>= 0.3.3), testthat, TxDb.Hsapiens.UCSC.hg19.knownGene, covr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/derfinderPlot |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/derfinderPlot |
| Package Short Url | https://bioconductor.org/packages/derfinderPlot/ |
| Package Downloads Report | Download Stats |