epivizrStandalone
This is the development version of epivizrStandalone; for the stable release version, see epivizrStandalone.
Run Epiviz Interactive Genomic Data Visualization App within R
Bioconductor version: Development (3.21)
This package imports the epiviz visualization JavaScript app for genomic data interactive visualization. The 'epivizrServer' package is used to provide a web server running completely within R. This standalone version allows to browse arbitrary genomes through genome annotations provided by Bioconductor packages.
Author: Hector Corrada Bravo, Jayaram Kancherla
Maintainer: Hector Corrada Bravo <hcorrada at gmail.com>
citation("epivizrStandalone")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("epivizrStandalone")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("epivizrStandalone")| Introduction to epivizrStandalone | HTML |
| Reference Manual |
Details
| biocViews | GUI, Infrastructure, Software, Visualization |
| Version | 1.35.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (8.5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 3.2.3), epivizr(>= 2.3.6), methods |
| Imports | git2r, epivizrServer, GenomeInfoDb, BiocGenerics, GenomicFeatures, S4Vectors |
| System Requirements | |
| URL |
See More
| Suggests | testthat, knitr, rmarkdown, OrganismDbi(>= 1.13.9), Mus.musculus, Biobase, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | scTreeViz |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | epivizrStandalone_1.35.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/epivizrStandalone |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/epivizrStandalone |
| Bioc Package Browser | https://code.bioconductor.org/browse/epivizrStandalone/ |
| Package Short Url | https://bioconductor.org/packages/epivizrStandalone/ |
| Package Downloads Report | Download Stats |