ggtreeDendro

This is the development version of ggtreeDendro; for the stable release version, see ggtreeDendro.

Drawing 'dendrogram' using 'ggtree'

Bioconductor version: Development (3.21)

Offers a set of 'autoplot' methods to visualize tree-like structures (e.g., hierarchical clustering and classification/regression trees) using 'ggtree'. You can adjust graphical parameters using grammar of graphic syntax and integrate external data to the tree.

Author: Guangchuang Yu [aut, cre, cph] (ORCID: ), Shuangbin Xu [ctb] (ORCID: ), Chuanjie Zhang [ctb]

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("ggtreeDendro")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ggtreeDendro")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ggtreeDendro")

Visualizing Dendrogram using ggtree	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Classification, Clustering, DecisionTree, Phylogenetics, Software, Visualization
Version	1.9.0
In Bioconductor since	BioC 3.16 (R-4.2) (2 years)
License	Artistic-2.0
Depends	ggtree(>= 3.5.3)
Imports	ggplot2, stats, tidytree, utils
System Requirements
URL

Suggests	aplot, cluster, knitr, MASS, mdendro, prettydoc, pvclust, rmarkdown, testthat (>= 3.0.0), treeio, yulab.utils
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ggtreeDendro_1.9.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/ggtreeDendro
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ggtreeDendro
Bioc Package Browser	https://code.bioconductor.org/browse/ggtreeDendro/
Package Short Url	https://bioconductor.org/packages/ggtreeDendro/
Package Downloads Report	Download Stats