igvShiny
This is the development version of igvShiny; for the stable release version, see igvShiny.
igvShiny: a wrapper of Integrative Genomics Viewer (IGV - an interactive tool for visualization and exploration integrated genomic data)
Bioconductor version: Development (3.21)
This package is a wrapper of Integrative Genomics Viewer (IGV). It comprises an htmlwidget version of IGV. It can be used as a module in Shiny apps.
Author: Paul Shannon [aut], Arkadiusz Gladki [aut, cre] (ORCID:
Maintainer: Arkadiusz Gladki <gladki.arkadiusz at gmail.com>
citation("igvShiny")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("igvShiny")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("igvShiny")| igvShiny Overview | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Coverage, Sequencing, ShinyApps, Software |
| Version | 1.3.0 |
| In Bioconductor since | BioC 3.19 (R-4.4) (0.5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 3.5.0), GenomicRanges, methods, shiny |
| Imports | BiocGenerics, checkmate, futile.logger, GenomeInfoDbData, htmlwidgets, httr, jsonlite, randomcoloR, utils |
| System Requirements | |
| URL | https://github.com/gladkia/igvShiny https://gladkia.github.io/igvShiny/ |
| Bug Reports | https://github.com/gladkia/igvShiny/issues |
See More
| Suggests | BiocStyle, GenomicAlignments, knitr, Rsamtools, rtracklayer, RUnit, shinytest2, VariantAnnotation |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | igvShiny_1.3.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/igvShiny |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/igvShiny |
| Bioc Package Browser | https://code.bioconductor.org/browse/igvShiny/ |
| Package Short Url | https://bioconductor.org/packages/igvShiny/ |
| Package Downloads Report | Download Stats |