qcmetrics
This is the development version of qcmetrics; for the stable release version, see qcmetrics.
A Framework for Quality Control
Bioconductor version: Development (3.21)
The package provides a framework for generic quality control of data. It permits to create, manage and visualise individual or sets of quality control metrics and generate quality control reports in various formats.
Author: Laurent Gatto [aut, cre]
Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>
citation("qcmetrics")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("qcmetrics")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("qcmetrics")| Index file for the qcmetrics package vignette | HTML | R Script |
| Reference Manual |
Details
| biocViews | ImmunoOncology, MassSpectrometry, Microarray, Proteomics, QualityControl, ReportWriting, Software, Visualization |
| Version | 1.45.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (11 years) |
| License | GPL-2 |
| Depends | R (>= 3.3) |
| Imports | Biobase, methods, knitr, tools, xtable, pander, S4Vectors |
| System Requirements | |
| URL | http://lgatto.github.io/qcmetrics/articles/qcmetrics.html |
| Bug Reports | https://github.com/lgatto/qcmetrics/issues |
See More
| Suggests | affy, MSnbase, ggplot2, lattice, mzR, BiocStyle, rmarkdown, markdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | qcmetrics_1.45.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/qcmetrics |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/qcmetrics |
| Bioc Package Browser | https://code.bioconductor.org/browse/qcmetrics/ |
| Package Short Url | https://bioconductor.org/packages/qcmetrics/ |
| Package Downloads Report | Download Stats |