rSWeeP

This is the development version of rSWeeP; for the stable release version, see rSWeeP.

Spaced Words Projection (SWeeP)

Bioconductor version: Development (3.21)

"Spaced Words Projection (SWeeP)" is a method for representing biological sequences using vectors preserving inter-sequence comparability.

Author: Camila Pereira Perico [com, cre, aut, cph] (ORCID: ), Danrley Rafael Fernandes [aut], Mariane Gonçalves Kulik [aut] (ORCID: ), Júlia Formighieri Varaschin [aut], Camilla Reginatto de Pierri [aut] (ORCID: ), Ricardo Assunção Vialle [aut] (ORCID: ), Roberto Tadeu Raittz [aut, cph] (ORCID: )

Maintainer: Camila P Perico <camilapp94 at gmail.com>

Citation (from within R, enter citation("rSWeeP")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("rSWeeP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rSWeeP")

rSWeeP	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Software
Version	1.19.0
In Bioconductor since	BioC 3.11 (R-4.0) (4.5 years)
License	GPL (>= 2)
Depends	foreach, doParallel, parallel, Biostrings, methods, utils
Imports	tools, stringi
System Requirements
URL

Suggests	Rtsne, ape, Seurat, knitr, rmarkdown, tictoc, BiocStyle, testthat (>= 3.0.0)
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	rSWeeP_1.19.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/rSWeeP
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/rSWeeP
Bioc Package Browser	https://code.bioconductor.org/browse/rSWeeP/
Package Short Url	https://bioconductor.org/packages/rSWeeP/
Package Downloads Report	Download Stats