1#ifndef VIENNA_RNA_PACKAGE_FILE_FORMATS_MSA_H
2#define VIENNA_RNA_PACKAGE_FILE_FORMATS_MSA_H
23#define VRNA_FILE_FORMAT_MSA_CLUSTAL 1U
30#define VRNA_FILE_FORMAT_MSA_STOCKHOLM 2U
37#define VRNA_FILE_FORMAT_MSA_FASTA 4U
44#define VRNA_FILE_FORMAT_MSA_MAF 8U
54#define VRNA_FILE_FORMAT_MSA_MIS 16U
61#define VRNA_FILE_FORMAT_MSA_DEFAULT ( \
62 VRNA_FILE_FORMAT_MSA_CLUSTAL \
63 | VRNA_FILE_FORMAT_MSA_STOCKHOLM \
64 | VRNA_FILE_FORMAT_MSA_FASTA \
65 | VRNA_FILE_FORMAT_MSA_MAF \
73#define VRNA_FILE_FORMAT_MSA_NOCHECK 4096U
80#define VRNA_FILE_FORMAT_MSA_UNKNOWN 8192U
87#define VRNA_FILE_FORMAT_MSA_APPEND 16384U
94#define VRNA_FILE_FORMAT_MSA_QUIET 32768U
101#define VRNA_FILE_FORMAT_MSA_SILENT 65536U
160 unsigned int options);
224 unsigned int options);
254 unsigned int options);
279 const char *structure,
281 unsigned int options);