RNAlib-2.6.3
 
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Parse and apply different commands that alter the behavior of secondary structure prediction and evaluation. More...

+ Include dependency graph for commands.h:

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Macros

#define VRNA_CMD_PARSE_HC   1U
 Command parse/apply flag indicating hard constraints.
 
#define VRNA_CMD_PARSE_SC   2U
 Command parse/apply flag indicating soft constraints.
 
#define VRNA_CMD_PARSE_UD   4U
 Command parse/apply flag indicating unstructured domains.
 
#define VRNA_CMD_PARSE_SD   8U
 Command parse/apply flag indicating structured domains.
 
#define VRNA_CMD_PARSE_DEFAULTS
 Command parse/apply flag indicating default set of commands.
 

Typedefs

typedef struct vrna_command_s * vrna_cmd_t
 A data structure that contains commands.
 

Functions

vrna_cmd_t vrna_file_commands_read (const char *filename, unsigned int options)
 Extract a list of commands from a command file.
 
int vrna_file_commands_apply (vrna_fold_compound_t *fc, const char *filename, unsigned int options)
 Apply a list of commands from a command file.
 
int vrna_commands_apply (vrna_fold_compound_t *fc, vrna_cmd_t commands, unsigned int options)
 Apply a list of commands to a vrna_fold_compound_t.
 
void vrna_commands_free (vrna_cmd_t commands)
 Free memory occupied by a list of commands.
 

Detailed Description

Parse and apply different commands that alter the behavior of secondary structure prediction and evaluation.

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