RNAlib-2.6.3
 
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Data Structures
Here are the data structures with brief descriptions:
 C_struct_enData structure for energy_of_move()
 CconstrainConstraints for cofolding
 CCOORDINATEThis is a workarround for the SWIG Perl Wrapper RNA plot function that returns an array of type COORDINATE
 CduplexTData structure for RNAduplex
 CdupVarData structure used in RNApkplex
 Cenergy_corrections
 CinteractInteraction data structure for RNAup
 CLIST
 CLST_BUCKET
 CnodeData structure for RNAsnoop (fold energy list)
 CPostorder_listPostorder data structure
 Cpu_contribContributions to p_u
 Cpu_outCollection of all free_energy of beeing unpaired values for output
 CsnoopTData structure for RNAsnoop
 CswStringSome other data structure
 CTreeTree data structure
 CTwoDfold_varsVariables compound for 2Dfold MFE folding
 CTwoDpfold_varsVariables compound for 2Dfold partition function folding
 Cvrna_alignment_s
 Cvrna_array_header_sThe header of an array
 Cvrna_basepair_sBase pair data structure used in subopt.c
 Cvrna_bp_stack_sBase pair stack element
 Cvrna_color_s
 Cvrna_cpair_sThis datastructure is used as input parameter in functions of PS_dot.c
 Cvrna_data_linear_s
 Cvrna_dimer_conc_sData structure for concentration dependency computations
 Cvrna_dimer_pf_sData structure returned by vrna_pf_dimer()
 Cvrna_dotplot_auxdata_t
 Cvrna_elem_prob_sData structure representing a single entry of an element probability list (e.g. list of pair probabilities)
 Cvrna_exp_param_sThe data structure that contains temperature scaled Boltzmann weights of the energy parameters
 Cvrna_fc_sThe most basic data structure required by many functions throughout the RNAlib
 Cvrna_gr_aux_s
 Cvrna_hc_sThe hard constraints data structure
 Cvrna_hc_up_sA single hard constraint for a single nucleotide
 Cvrna_heat_capacity_sA single result from heat capacity computations
 Cvrna_ht_entry_db_tDefault hash table entry
 Cvrna_hx_sData structure representing an entry of a helix list
 Cvrna_md_sThe data structure that contains the complete model details used throughout the calculations
 Cvrna_move_sAn atomic representation of the transition / move from one structure to its neighbor
 Cvrna_multimer_pf_s
 Cvrna_mx_mfe_sMinimum Free Energy (MFE) Dynamic Programming (DP) matrices data structure required within the vrna_fold_compound_t
 Cvrna_mx_pf_sPartition function (PF) Dynamic Programming (DP) matrices data structure required within the vrna_fold_compound_t
 Cvrna_param_sThe datastructure that contains temperature scaled energy parameters
 Cvrna_path_sAn element of a refolding path list
 Cvrna_pinfo_sA base pair info structure
 Cvrna_pk_plex_result_sA result of the RNA PKplex interaction prediction
 Cvrna_plot_layout_s
 Cvrna_plot_options_puzzler_tOptions data structure for RNApuzzler algorithm implementation
 Cvrna_sc_bp_storage_tA base pair constraint
 Cvrna_sc_mod_param_s
 Cvrna_sc_motif_s
 Cvrna_sc_sThe soft constraints data structure
 Cvrna_sect_sStack of partial structures for backtracking
 Cvrna_sequence_sData structure representing a nucleotide sequence
 Cvrna_sol_TwoD_pf_tSolution element returned from vrna_pf_TwoD()
 Cvrna_sol_TwoD_tSolution element returned from vrna_mfe_TwoD()
 Cvrna_string_header_sThe header of an array
 Cvrna_structured_domains_s
 Cvrna_subopt_sol_sSolution element from subopt.c
 Cvrna_unstructured_domain_motif_s
 Cvrna_unstructured_domain_sData structure to store all functionality for ligand binding