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| basic.h |
| Functions and data structures for constraining secondary structure predictions and evaluation.
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| hard.h |
| Functions and data structures for handling of secondary structure hard constraints.
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| ligand.h |
| Functions for incorporation of ligands binding to hairpin and interior loop motifs using the soft constraints framework.
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| sc_cb_intern.h |
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| SHAPE.h |
| This module provides function to incorporate SHAPE reactivity data into the folding recursions by means of soft constraints.
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| soft.h |
| Functions and data structures for secondary structure soft constraints.
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| soft_special.h |
| Specialized implementations that utilize the soft constraint callback mechanism.
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