Compute local Minimum Free Energy (MFE) using a sliding window approach and backtrace corresponding secondary structures. More...
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Typedefs | |
typedef void(* | vrna_mfe_window_f) (int start, int end, const char *structure, float en, void *data) |
The default callback for sliding window MFE structure predictions. | |
Functions | |
Basic local (sliding window) MFE prediction interface | |
float | vrna_mfe_window (vrna_fold_compound_t *fc, FILE *file) |
Local MFE prediction using a sliding window approach. | |
float | vrna_mfe_window_zscore (vrna_fold_compound_t *fc, double min_z, FILE *file) |
Local MFE prediction using a sliding window approach (with z-score cut-off) | |
Simplified local MFE prediction using sequence(s) or multiple sequence alignment(s) | |
float | vrna_Lfold (const char *string, int window_size, FILE *file) |
Local MFE prediction using a sliding window approach (simplified interface) | |
float | vrna_Lfoldz (const char *string, int window_size, double min_z, FILE *file) |
Local MFE prediction using a sliding window approach with z-score cut-off (simplified interface) | |
Compute local Minimum Free Energy (MFE) using a sliding window approach and backtrace corresponding secondary structures.
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This file includes the interface to all functions related to predicting locally stable secondary structures.