RNAlib-2.6.3
 
Loading...
Searching...
No Matches
Suboptimal Structures sensu Stiegler et al. 1984 / Zuker et al. 1989

Detailed Description

+ Collaboration diagram for Suboptimal Structures sensu Stiegler et al. 1984 / Zuker et al. 1989:

Functions

SOLUTIONzukersubopt (const char *string)
 Compute Zuker type suboptimal structures.
 
SOLUTIONzukersubopt_par (const char *string, vrna_param_t *parameters)
 Compute Zuker type suboptimal structures.
 
vrna_subopt_solution_tvrna_subopt_zuker (vrna_fold_compound_t *fc)
 Compute Zuker type suboptimal structures.
 

Function Documentation

◆ zukersubopt()

SOLUTION * zukersubopt ( const char *  string)

#include <ViennaRNA/subopt.h>

Compute Zuker type suboptimal structures.

Compute Suboptimal structures according to M. Zuker, i.e. for every possible base pair the minimum energy structure containing the resp. base pair. Returns a list of these structures and their energies.

Deprecated:
use vrna_zukersubopt() instead
Parameters
stringRNA sequence
Returns
List of zuker suboptimal structures

◆ zukersubopt_par()

SOLUTION * zukersubopt_par ( const char *  string,
vrna_param_t parameters 
)

#include <ViennaRNA/subopt.h>

Compute Zuker type suboptimal structures.

Deprecated:
use vrna_zukersubopt() instead

◆ vrna_subopt_zuker()

vrna_subopt_solution_t * vrna_subopt_zuker ( vrna_fold_compound_t fc)

#include <ViennaRNA/subopt_zuker.h>

Compute Zuker type suboptimal structures.

Compute Suboptimal structures according to M. Zuker [35] , i.e. for every possible base pair the minimum energy structure containing the resp. base pair. Returns a list of these structures and their energies.

See also
vrna_subopt(), zukersubopt(), zukersubopt_par()
Parameters
fcfold compound
Returns
List of zuker suboptimal structures
SWIG Wrapper Notes:
This function is attached as method subopt_zuker() to objects of type fold_compound