RNAlib-2.6.3
 
Loading...
Searching...
No Matches

Compute local Minimum Free Energy (MFE) using a sliding window approach and backtrace corresponding secondary structures. More...

+ Include dependency graph for mfe_window.h:
+ This graph shows which files directly or indirectly include this file:

Go to the source code of this file.

Typedefs

typedef void(* vrna_mfe_window_f) (int start, int end, const char *structure, float en, void *data)
 The default callback for sliding window MFE structure predictions.
 

Functions

Basic local (sliding window) MFE prediction interface
float vrna_mfe_window (vrna_fold_compound_t *fc, FILE *file)
 Local MFE prediction using a sliding window approach.
 
float vrna_mfe_window_zscore (vrna_fold_compound_t *fc, double min_z, FILE *file)
 Local MFE prediction using a sliding window approach (with z-score cut-off)
 
Simplified local MFE prediction using sequence(s) or multiple sequence alignment(s)
float vrna_Lfold (const char *string, int window_size, FILE *file)
 Local MFE prediction using a sliding window approach (simplified interface)
 
float vrna_Lfoldz (const char *string, int window_size, double min_z, FILE *file)
 Local MFE prediction using a sliding window approach with z-score cut-off (simplified interface)
 

Detailed Description

Compute local Minimum Free Energy (MFE) using a sliding window approach and backtrace corresponding secondary structures.

,

This file includes the interface to all functions related to predicting locally stable secondary structures.