RNAlib-2.6.3
 
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Energy evaluation of multibranch loops for MFE and partition function calculations. More...

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Functions

int vrna_BT_mb_loop (vrna_fold_compound_t *fc, int *i, int *j, int *k, int en, int *component1, int *component2)
 Backtrack the decomposition of a multi branch loop closed by $ (i,j) $.
 
Basic free energy interface
int vrna_E_mb_loop_stack (vrna_fold_compound_t *fc, int i, int j)
 Evaluate energy of a multi branch helices stacking onto closing pair (i,j)
 

Boltzmann weight (partition function) interface

typedef struct vrna_mx_pf_aux_ml_s * vrna_mx_pf_aux_ml_t
 Auxiliary helper arrays for fast exterior loop computations.
 

Detailed Description

Energy evaluation of multibranch loops for MFE and partition function calculations.

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