RNAlib-2.6.3
 
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Energy evaluation of exterior loops for MFE and partition function calculations. More...

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Functions

int E_Stem (int type, int si1, int sj1, int extLoop, vrna_param_t *P)
 Compute the energy contribution of a stem branching off a loop-region.
 
FLT_OR_DBL exp_E_ExtLoop (int type, int si1, int sj1, vrna_exp_param_t *P)
 
FLT_OR_DBL exp_E_Stem (int type, int si1, int sj1, int extLoop, vrna_exp_param_t *P)
 
Basic free energy interface
int vrna_E_ext_stem (unsigned int type, int n5d, int n3d, vrna_param_t *p)
 Evaluate a stem branching off the exterior loop.
 
int vrna_eval_ext_stem (vrna_fold_compound_t *fc, int i, int j)
 Evaluate the free energy of a base pair in the exterior loop.
 

Boltzmann weight (partition function) interface

typedef struct vrna_mx_pf_aux_el_s * vrna_mx_pf_aux_el_t
 Auxiliary helper arrays for fast exterior loop computations.
 
FLT_OR_DBL vrna_exp_E_ext_stem (unsigned int type, int n5d, int n3d, vrna_exp_param_t *p)
 Evaluate a stem branching off the exterior loop (Boltzmann factor version)
 

Detailed Description

Energy evaluation of exterior loops for MFE and partition function calculations.

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