Various functions for plotting RNA secondary structures, dot-plots and other visualizations. More...
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Data Structures | |
struct | vrna_dotplot_auxdata_t |
Macros | |
#define | VRNA_PLOT_PROBABILITIES_BP 1U |
Option flag for base pair probabilities in probability plot output functions. | |
#define | VRNA_PLOT_PROBABILITIES_ACC 2U |
Option flag for accessibilities in probability plot output functions. | |
#define | VRNA_PLOT_PROBABILITIES_UD 4U |
Option flag for unstructured domain probabilities in probability plot output functions. | |
#define | VRNA_PLOT_PROBABILITIES_UD_LIN 8U |
Option flag for unstructured domain probabilities (linear representation) in probability plot output functions. | |
#define | VRNA_PLOT_PROBABILITIES_SD 16U |
Option flag for structured domain probabilities (such as G-quadruplexes) in probability plot output functions. | |
#define | VRNA_PLOT_PROBABILITIES_SC_MOTIF 32U |
Option flag for soft-constraint motif probabilities in probability plot output functions. | |
#define | VRNA_PLOT_PROBABILITIES_DEFAULT |
Default option flag for probability plot output functions. | |
Functions | |
int | vrna_plot_dp_EPS (const char *filename, const char *sequence, vrna_ep_t *upper, vrna_ep_t *lower, vrna_dotplot_auxdata_t *auxdata, unsigned int options) |
Produce an encapsulate PostScript (EPS) dot-plot from one or two lists of base pair probabilities. | |
int | vrna_plot_dp_PS_list (char *seq, int cp, char *filename, vrna_ep_t *pl, vrna_ep_t *mf, char *comment) |
Produce a postscript dot-plot from two pair lists. | |
int | PS_dot_plot_list (char *seq, char *filename, vrna_ep_t *pl, vrna_ep_t *mf, char *comment) |
Produce a postscript dot-plot from two pair lists. | |
int | PS_dot_plot (char *string, char *file) |
Produce postscript dot-plot. | |
Various functions for plotting RNA secondary structures, dot-plots and other visualizations.