RNAlib-2.6.3
 
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MEA.h
Go to the documentation of this file.
1#ifndef VIENNA_RNA_PACKAGE_MEA_H
2#define VIENNA_RNA_PACKAGE_MEA_H
3
6
37char *
39 double gamma,
40 float *mea);
41
42
73char *
75 const char *sequence,
76 double gamma,
77 vrna_md_t *md,
78 float *mea);
79
80
81#ifndef VRNA_DISABLE_BACKWARD_COMPATIBILITY
82
83#ifdef VRNA_WARN_DEPRECATED
84# if defined(__clang__)
85# define DEPRECATED(func, msg) func __attribute__ ((deprecated("", msg)))
86# elif defined(__GNUC__)
87# define DEPRECATED(func, msg) func __attribute__ ((deprecated(msg)))
88# else
89# define DEPRECATED(func, msg) func
90# endif
91#else
92# define DEPRECATED(func, msg) func
93#endif
94
95
113DEPRECATED(float
114 MEA(plist *p,
115 char *structure,
116 double gamma),
117 "Use vrna_MEA() or vrna_MEA_from_plist() instead!");
118
119
120DEPRECATED(float
121 MEA_seq(plist *p,
122 const char *sequence,
123 char *structure,
124 double gamma,
125 vrna_exp_param_t *pf),
126 "Use vrna_MEA() or vrna_MEA_from_plist() instead!");
127
128
129#endif
130
131#endif
Various data structures and pre-processor macros.
The data structure that contains temperature scaled Boltzmann weights of the energy parameters.
Definition basic.h:110
The most basic data structure required by many functions throughout the RNAlib.
Definition fold_compound.h:168
char * vrna_MEA_from_plist(vrna_ep_t *plist, const char *sequence, double gamma, vrna_md_t *md, float *mea)
Compute a MEA (maximum expected accuracy) structure from a list of probabilities.
float MEA(plist *p, char *structure, double gamma)
Computes a MEA (maximum expected accuracy) structure.
char * vrna_MEA(vrna_fold_compound_t *fc, double gamma, float *mea)
Compute a MEA (maximum expected accuracy) structure.
The data structure that contains the complete model details used throughout the calculations.
Definition model.h:245
Data structure representing a single entry of an element probability list (e.g. list of pair probabil...
Definition structures.h:486
Functions to deal with sets of energy parameters.