Functions to evaluate the free energy contributions for mutlibranch loops. More...
Functions to evaluate the free energy contributions for mutlibranch loops.
Files | |
file | multibranch.h |
Energy evaluation of multibranch loops for MFE and partition function calculations. | |
Boltzmann weight (partition function) interface | |
typedef struct vrna_mx_pf_aux_ml_s * | vrna_mx_pf_aux_ml_t |
Auxiliary helper arrays for fast exterior loop computations. | |
Basic free energy interface | |
int | vrna_E_mb_loop_stack (vrna_fold_compound_t *fc, int i, int j) |
Evaluate energy of a multi branch helices stacking onto closing pair (i,j) | |
typedef struct vrna_mx_pf_aux_ml_s* vrna_mx_pf_aux_ml_t |
#include <ViennaRNA/loops/multibranch.h>
Auxiliary helper arrays for fast exterior loop computations.
int vrna_E_mb_loop_stack | ( | vrna_fold_compound_t * | fc, |
int | i, | ||
int | j | ||
) |
#include <ViennaRNA/loops/multibranch.h>
Evaluate energy of a multi branch helices stacking onto closing pair (i,j)
Computes total free energy for coaxial stacking of (i.j) with (i+1.k) or (k+1.j-1)