Energy evaluation of interior loops for MFE and partition function calculations. More...
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Functions | |
int | vrna_BT_stack (vrna_fold_compound_t *fc, int *i, int *j, int *en, vrna_bp_stack_t *bp_stack, int *stack_count) |
Backtrack a stacked pair closed by ![]() | |
int | vrna_BT_int_loop (vrna_fold_compound_t *fc, int *i, int *j, int en, vrna_bp_stack_t *bp_stack, int *stack_count) |
Backtrack an interior loop closed by ![]() | |
PRIVATE int | E_IntLoop (int n1, int n2, int type, int type_2, int si1, int sj1, int sp1, int sq1, vrna_param_t *P) |
PRIVATE FLT_OR_DBL | exp_E_IntLoop (int u1, int u2, int type, int type2, short si1, short sj1, short sp1, short sq1, vrna_exp_param_t *P) |
Basic free energy interface | |
int | vrna_eval_int_loop (vrna_fold_compound_t *fc, int i, int j, int k, int l) |
Evaluate the free energy contribution of an interior loop with delimiting base pairs ![]() ![]() | |
Boltzmann weight (partition function) interface |
Energy evaluation of interior loops for MFE and partition function calculations.
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