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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ARRmNormalization")
In most cases, you don't need to download the package archive at all.
ARRmNormalization
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This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see ARRmNormalization.
Adaptive Robust Regression normalization for Illumina methylation data
Bioconductor version: 3.0
Perform the Adaptive Robust Regression method (ARRm) for the normalization of methylation data from the Illumina Infinium HumanMethylation 450k assay.
Author: Jean-Philippe Fortin, Celia M.T. Greenwood, Aurelie Labbe.
Maintainer: Jean-Philippe Fortin <jfortin at jhsph.edu>
Citation (from within R,
enter citation("ARRmNormalization")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ARRmNormalization")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ARRmNormalization")
| R Script | ARRmNormalization | |
| Reference Manual |
Details
| biocViews | DNAMethylation, Microarray, Preprocessing, Software, TwoChannel |
| Version | 1.6.0 |
| In Bioconductor since | BioC 2.12 (R-3.0) (3 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.15.1), ARRmData |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | ARRmNormalization_1.6.0.tar.gz |
| Windows Binary | ARRmNormalization_1.6.0.zip |
| Mac OS X 10.6 (Snow Leopard) | ARRmNormalization_1.6.0.tgz |
| Mac OS X 10.9 (Mavericks) | ARRmNormalization_1.6.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/ARRmNormalization/tree/release-3.0 |
| Package Short Url | http://bioconductor.org/packages/ARRmNormalization/ |
| Package Downloads Report | Download Stats |
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