To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AtlasRDF")

In most cases, you don't need to download the package archive at all.

AtlasRDF

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see AtlasRDF.

Gene Expression Atlas query and gene set enrichment package.

Bioconductor version: 3.0

Query the Gene Expression Atlas RDF data at the European Bioinformatics Institute using genes, experimental factors (such as disease, cell type, compound treatments), pathways and proteins. Also contains a function to perform an enrichment of your gene list across Experimental Factor Ontology (EFO) using the Atlas background set.

Author: James Malone, Simon Jupp, Maryam Soleimani

Maintainer: James Malone <malone at ebi.ac.uk>

Citation (from within R, enter citation("AtlasRDF")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AtlasRDF")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AtlasRDF")

PDF	R Script	An introduction to the AtlasRDF-R package
PDF		Reference Manual

Details

biocViews	DataImport, DataRepresentation, DifferentialExpression, GeneExpression, GeneSetEnrichment, Microarray, Software
Version	1.2.0
In Bioconductor since	BioC 2.14 (R-3.1) (2 years)
License	Apache License 2.0
Depends	R (>= 2.10), hash, SPARQL, methods
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	AtlasRDF_1.2.0.tar.gz
Windows Binary	AtlasRDF_1.2.0.zip
Mac OS X 10.6 (Snow Leopard)	AtlasRDF_1.2.0.tgz
Mac OS X 10.9 (Mavericks)	AtlasRDF_1.2.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/AtlasRDF/tree/release-3.0
Package Short Url	http://bioconductor.org/packages/AtlasRDF/
Package Downloads Report	Download Stats

Documentation »

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