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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CGHcall")
In most cases, you don't need to download the package archive at all.
CGHcall
|
This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see CGHcall.
Calling aberrations for array CGH tumor profiles.
Bioconductor version: 3.0
Calls aberrations for array CGH data using a six state mixture model as well as several biological concepts that are ignored by existing algorithms. Visualization of profiles is also provided.
Author: Mark van de Wiel, Sjoerd Vosse
Maintainer: Mark van de Wiel <mark.vdwiel at vumc.nl>
Citation (from within R,
enter citation("CGHcall")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CGHcall")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CGHcall")
| R Script | CGHcall | |
| Reference Manual |
Details
| biocViews | Microarray, Preprocessing, Software, Visualization |
| Version | 2.28.0 |
| In Bioconductor since | BioC 2.1 (R-2.6) (8.5 years) |
| License | GPL (http://www.gnu.org/copyleft/gpl.html) |
| Depends | R (>= 2.0.0), impute(>= 1.8.0), DNAcopy(>= 1.6.0), methods, Biobase, CGHbase(>= 1.15.1), snowfall |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | CGHnormaliter, focalCall |
| Imports Me | CGHnormaliter, QDNAseq |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | CGHcall_2.28.0.tar.gz |
| Windows Binary | CGHcall_2.28.0.zip |
| Mac OS X 10.6 (Snow Leopard) | CGHcall_2.28.0.tgz |
| Mac OS X 10.9 (Mavericks) | CGHcall_2.28.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/CGHcall/tree/release-3.0 |
| Package Short Url | http://bioconductor.org/packages/CGHcall/ |
| Package Downloads Report | Download Stats |
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