To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DBChIP")

In most cases, you don't need to download the package archive at all.

DBChIP

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see DBChIP.

Differential Binding of Transcription Factor with ChIP-seq

Bioconductor version: 3.0

DBChIP detects differentially bound sharp binding sites across multiple conditions, with or without matching control samples.

Author: Kun Liang

Maintainer: Kun Liang <kliang at stat.wisc.edu>

Citation (from within R, enter citation("DBChIP")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DBChIP")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DBChIP")

PDF	R Script	DBChIP
PDF		Reference Manual

biocViews	ChIPSeq, Genetics, Sequencing, Software, Transcription
Version	1.10.0
In Bioconductor since	BioC 2.11 (R-2.15) (3.5 years)
License	GPL (>= 2)
Depends	R (>= 2.15.0), edgeR, DESeq
Imports
LinkingTo
Suggests	ShortRead, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	DBChIP_1.10.0.tar.gz
Windows Binary	DBChIP_1.10.0.zip
Mac OS X 10.6 (Snow Leopard)	DBChIP_1.10.0.tgz
Mac OS X 10.9 (Mavericks)	DBChIP_1.10.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/DBChIP/tree/release-3.0
Package Short Url	http://bioconductor.org/packages/DBChIP/
Package Downloads Report	Download Stats

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