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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DeconRNASeq")
In most cases, you don't need to download the package archive at all.
DeconRNASeq
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This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see DeconRNASeq.
Deconvolution of Heterogeneous Tissue Samples for mRNA-Seq data
Bioconductor version: 3.0
DeconSeq is an R package for deconvolution of heterogeneous tissues based on mRNA-Seq data. It modeled expression levels from heterogeneous cell populations in mRNA-Seq as the weighted average of expression from different constituting cell types and predicted cell type proportions of single expression profiles.
Author: Ting Gong <tinggong at gmail.com> Joseph D. Szustakowski <joseph.szustakowski at novartis.com>
Maintainer: Ting Gong <tinggong at gmail.com>
Citation (from within R,
enter citation("DeconRNASeq")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DeconRNASeq")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DeconRNASeq")
| R Script | DeconRNASeq Demo | |
| Reference Manual |
Details
| biocViews | DifferentialExpression, Software |
| Version | 1.8.0 |
| In Bioconductor since | BioC 2.11 (R-2.15) (3.5 years) |
| License | GPL-2 |
| Depends | R (>= 2.14.0), limSolve, pcaMethods, ggplot2, grid |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | DeconRNASeq_1.8.0.tar.gz |
| Windows Binary | DeconRNASeq_1.8.0.zip |
| Mac OS X 10.6 (Snow Leopard) | DeconRNASeq_1.8.0.tgz |
| Mac OS X 10.9 (Mavericks) | DeconRNASeq_1.8.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/DeconRNASeq/tree/release-3.0 |
| Package Short Url | http://bioconductor.org/packages/DeconRNASeq/ |
| Package Downloads Report | Download Stats |
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