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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GOsummaries")
In most cases, you don't need to download the package archive at all.
GOsummaries
|
This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see GOsummaries.
Word cloud summaries of GO enrichment analysis
Bioconductor version: 3.0
A package to visualise Gene Ontology (GO) enrichment analysis results on gene lists arising from different analyses such clustering or PCA. The significant GO categories are visualised as word clouds that can be combined with different plots summarising the underlying data.
Author: Raivo Kolde <raivo.kolde at eesti.ee>
Maintainer: Raivo Kolde <raivo.kolde at eesti.ee>
Citation (from within R,
enter citation("GOsummaries")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GOsummaries")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GOsummaries")
| R Script | GOsummaries basics | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Clustering, GO, GeneExpression, Software, Visualization |
| Version | 2.0.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (1.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.15), ggplot2, Rcpp |
| Imports | plyr, grid, gProfileR, reshape2, limma, gtable |
| LinkingTo | Rcpp |
| Suggests | vegan |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/raivokolde/GOsummaries |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | GOsummaries_2.0.0.tar.gz |
| Windows Binary | GOsummaries_2.0.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | GOsummaries_2.0.0.tgz |
| Mac OS X 10.9 (Mavericks) | GOsummaries_2.0.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/GOsummaries/tree/release-3.0 |
| Package Short Url | http://bioconductor.org/packages/GOsummaries/ |
| Package Downloads Report | Download Stats |
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