To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GeneOverlap")

In most cases, you don't need to download the package archive at all.

GeneOverlap

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see GeneOverlap.

Test and visualize gene overlaps

Bioconductor version: 3.0

Test two sets of gene lists and visualize the results.

Author: Li Shen, Mount Sinai <shenli.sam at gmail.com>

Maintainer: Li Shen, Mount Sinai <shenli.sam at gmail.com>

Citation (from within R, enter citation("GeneOverlap")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GeneOverlap")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GeneOverlap")

PDF	R Script	Testing and visualizing gene overlaps with the "GeneOverlap" package
PDF		Reference Manual

biocViews	MultipleComparison, Software, Visualization
Version	1.2.0
In Bioconductor since	BioC 2.14 (R-3.1) (2 years)
License	GPL-3
Depends
Imports	stats, RColorBrewer, gplots, methods
LinkingTo
Suggests	RUnit, BiocGenerics, BiocStyle
SystemRequirements
Enhances
URL	http://shenlab-sinai.github.io/shenlab-sinai/
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	GeneOverlap_1.2.0.tar.gz
Windows Binary	GeneOverlap_1.2.0.zip
Mac OS X 10.6 (Snow Leopard)	GeneOverlap_1.2.0.tgz
Mac OS X 10.9 (Mavericks)	GeneOverlap_1.2.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/GeneOverlap/tree/release-3.0
Package Short Url	http://bioconductor.org/packages/GeneOverlap/
Package Downloads Report	Download Stats

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