- Home
- Bioconductor 3.0
- Software Packages
- GraphAlignment
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GraphAlignment")
In most cases, you don't need to download the package archive at all.
GraphAlignment
|
This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see GraphAlignment.
GraphAlignment
Bioconductor version: 3.0
Graph alignment is an extension package for the R programming environment which provides functions for finding an alignment between two networks based on link and node similarity scores. (J. Berg and M. Laessig, "Cross-species analysis of biological networks by Bayesian alignment", PNAS 103 (29), 10967-10972 (2006))
Author: Joern P. Meier <mail at ionflux.org>, Michal Kolar, Ville Mustonen, Michael Laessig, and Johannes Berg.
Maintainer: Joern P. Meier <mail at ionflux.org>
Citation (from within R,
enter citation("GraphAlignment")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GraphAlignment")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GraphAlignment")
| R Script | GraphAlignment | |
| Reference Manual | ||
| Text | LICENSE |
Details
| biocViews | GraphAndNetwork, Network, Software |
| Version | 1.30.0 |
| In Bioconductor since | BioC 2.2 (R-2.7) (8 years) |
| License | file LICENSE |
| Depends | |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | http://www.thp.uni-koeln.de/~berg/GraphAlignment/ |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | GraphAlignment_1.30.0.tar.gz |
| Windows Binary | GraphAlignment_1.30.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | GraphAlignment_1.30.0.tgz |
| Mac OS X 10.9 (Mavericks) | GraphAlignment_1.30.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/GraphAlignment/tree/release-3.0 |
| Package Short Url | http://bioconductor.org/packages/GraphAlignment/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
