- Home
- Bioconductor 3.0
- Software Packages
- KEGGprofile
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("KEGGprofile")
In most cases, you don't need to download the package archive at all.
KEGGprofile
|
This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see KEGGprofile.
An annotation and visualization package for multi-types and multi-groups expression data in KEGG pathway
Bioconductor version: 3.0
KEGGprofile is an annotation and visualization tool which integrated the expression profiles and the function annotation in KEGG pathway maps. The multi-types and multi-groups expression data can be visualized in one pathway map. KEGGprofile facilitated more detailed analysis about the specific function changes inner pathway or temporal correlations in different genes and samples.
Author: Shilin Zhao, Yu Shyr
Maintainer: Shilin Zhao <shilin.zhao at vanderbilt.edu>
Citation (from within R,
enter citation("KEGGprofile")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("KEGGprofile")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("KEGGprofile")
| R Script | KEGGprofile: Application Examples | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Pathways, Software |
| Version | 1.8.2 |
| In Bioconductor since | BioC 2.11 (R-2.15) (3.5 years) |
| License | GPL (>= 2) |
| Depends | |
| Imports | AnnotationDbi, png, TeachingDemos, XML, KEGG.db, KEGGREST, biomaRt |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | FGNet |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | KEGGprofile_1.8.2.tar.gz |
| Windows Binary | KEGGprofile_1.8.2.zip |
| Mac OS X 10.6 (Snow Leopard) | KEGGprofile_1.8.2.tgz |
| Mac OS X 10.9 (Mavericks) | KEGGprofile_1.8.2.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/KEGGprofile/tree/release-3.0 |
| Package Short Url | http://bioconductor.org/packages/KEGGprofile/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
