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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MBAmethyl")
In most cases, you don't need to download the package archive at all.
MBAmethyl
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This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see MBAmethyl.
Model-based analysis of DNA methylation data
Bioconductor version: 3.0
This package provides a function for reconstructing DNA methylation values from raw measurements. It iteratively implements the group fused lars to smooth related-by-location methylation values and the constrained least squares to remove probe affinity effect across multiple sequences.
Author: Tao Wang, Mengjie Chen
Maintainer: Tao Wang <tao.wang.tw376 at yale.edu>
Citation (from within R,
enter citation("MBAmethyl")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MBAmethyl")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MBAmethyl")
| R Script | MBAmethyl Vignette | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DNAMethylation, MethylationArray, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (1.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.15) |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | MBAmethyl_1.0.0.tar.gz |
| Windows Binary | MBAmethyl_1.0.0.zip |
| Mac OS X 10.6 (Snow Leopard) | MBAmethyl_1.0.0.tgz |
| Mac OS X 10.9 (Mavericks) | MBAmethyl_1.0.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/MBAmethyl/tree/release-3.0 |
| Package Short Url | http://bioconductor.org/packages/MBAmethyl/ |
| Package Downloads Report | Download Stats |
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