To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("NuPoP")
In most cases, you don't need to download the package archive at all.
NuPoP
|
This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see NuPoP.
An R package for nucleosome positioning prediction
Bioconductor version: 3.0
NuPoP is an R package for Nucleosome Positioning Prediction.This package is built upon a duration hidden Markov model proposed in Xi et al, 2010; Wang et al, 2008. The core of the package was written in Fotran. In addition to the R package, a stand-alone Fortran software tool is also available at http://nucleosome.stats.northwestern.edu.
Author: Ji-Ping Wang <jzwang at northwestern.edu>; Liqun Xi <lxi700 at northwestern.edu>
Maintainer: Ji-Ping Wang<jzwang at northwestern.edu>
Citation (from within R,
enter citation("NuPoP")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("NuPoP")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("NuPoP")
| R Script | An R package for Nucleosome positioning prediction | |
| Reference Manual |
Details
| biocViews | Classification, Genetics, Software, Visualization |
| Version | 1.16.0 |
| In Bioconductor since | BioC 2.7 (R-2.12) (5.5 years) |
| License | GPL-2 |
| Depends | R (>= 2.10) |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | NuPoP_1.16.0.tar.gz |
| Windows Binary | NuPoP_1.16.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | NuPoP_1.16.0.tgz |
| Mac OS X 10.9 (Mavericks) | NuPoP_1.16.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/NuPoP/tree/release-3.0 |
| Package Short Url | http://bioconductor.org/packages/NuPoP/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
