- Home
- Bioconductor 3.0
- Software Packages
- OncoSimulR
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("OncoSimulR")
In most cases, you don't need to download the package archive at all.
OncoSimulR
|
This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see OncoSimulR.
Simulation of cancer progresion with order restrictions
Bioconductor version: 3.0
Functions for simulating and plotting cancer progression data, including drivers and passengers, and allowing for order restrictions. Simulations use continuous-time models (based on Bozic et al., 2010 and McFarland et al., 2013) and fitness functions account for possible restrictions in the order of accumulation of mutations.
Author: Ramon Diaz-Uriarte.
Maintainer: Ramon Diaz-Uriarte <rdiaz02 at gmail.com>
Citation (from within R,
enter citation("OncoSimulR")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("OncoSimulR")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("OncoSimulR")
| R Script | OncoSimulR Overview | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | BiologicalQuestion, Software, SomaticMutation |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (1.5 years) |
| License | GPL (>= 3) |
| Depends | R (>= 3.1.0) |
| Imports | Rcpp (>= 0.11.1), parallel, data.table, graph, Rgraphviz |
| LinkingTo | Rcpp |
| Suggests | BiocStyle, knitr, Oncotree |
| SystemRequirements | C++11 |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | OncoSimulR_1.0.0.tar.gz |
| Windows Binary | OncoSimulR_1.0.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | |
| Mac OS X 10.9 (Mavericks) | OncoSimulR_1.0.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/OncoSimulR/tree/release-3.0 |
| Package Short Url | http://bioconductor.org/packages/OncoSimulR/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
