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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RNAinteract")
In most cases, you don't need to download the package archive at all.
RNAinteract
|
This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see RNAinteract.
Estimate Pairwise Interactions from multidimensional features
Bioconductor version: 3.0
RNAinteract estimates genetic interactions from multi-dimensional read-outs like features extracted from images. The screen is assumed to be performed in multi-well plates or similar designs. Starting from a list of features (e.g. cell number, area, fluorescence intensity) per well, genetic interactions are estimated. The packages provides functions for reporting interacting gene pairs, plotting heatmaps and double RNAi plots. An HTML report can be written for quality control and analysis.
Author: Bernd Fischer <bernd.fischer at embl.de>
Maintainer: Bernd Fischer <bernd.fischer at embl.de>
Citation (from within R,
enter citation("RNAinteract")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RNAinteract")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RNAinteract")
| R Script | RNAinteract | |
| Reference Manual |
Details
| biocViews | CellBasedAssays, Preprocessing, QualityControl, Software, Visualization |
| Version | 1.14.0 |
| In Bioconductor since | BioC 2.8 (R-2.13) (5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.12.0), abind, locfit, Biobase |
| Imports | RColorBrewer, ICS, ICSNP, cellHTS2, geneplotter, gplots, grid, hwriter, lattice, latticeExtra, limma, methods, splots(>= 1.13.12) |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | RNAinteractMAPK |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | RNAinteract_1.14.0.tar.gz |
| Windows Binary | RNAinteract_1.14.0.zip |
| Mac OS X 10.6 (Snow Leopard) | RNAinteract_1.14.0.tgz |
| Mac OS X 10.9 (Mavericks) | RNAinteract_1.14.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/RNAinteract/tree/release-3.0 |
| Package Short Url | http://bioconductor.org/packages/RNAinteract/ |
| Package Downloads Report | Download Stats |
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