To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RamiGO")
In most cases, you don't need to download the package archive at all.
RamiGO
|
This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see RamiGO.
AmiGO visualize R interface
Bioconductor version: 3.0
R interface sending requests to AmiGO visualize, retrieving DAG GO trees, parsing GraphViz DOT format files and exporting GML files for Cytoscape. Also uses RCytoscape to interactively display AmiGO trees in Cytoscape.
Author: Markus Schroeder, Daniel Gusenleitner, John Quackenbush, Aedin Culhane, Benjamin Haibe-Kains
Maintainer: Markus Schroeder <markus.schroeder at ucdconnect.ie>
Citation (from within R,
enter citation("RamiGO")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RamiGO")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RamiGO")
| R Script | RamiGO: An Introduction (HowTo) | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Classification, GO, GraphAndNetwork, Software, ThirdPartyClient, Visualization |
| Version | 1.12.1 |
| In Bioconductor since | BioC 2.9 (R-2.14) (4.5 years) |
| License | Artistic-2.0 |
| Depends | gsubfn, methods |
| Imports | igraph, RCurl, png, RCytoscape, graph |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | RamiGO_1.12.1.tar.gz |
| Windows Binary | RamiGO_1.12.1.zip |
| Mac OS X 10.6 (Snow Leopard) | RamiGO_1.12.1.tgz |
| Mac OS X 10.9 (Mavericks) | RamiGO_1.12.1.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/RamiGO/tree/release-3.0 |
| Package Short Url | http://bioconductor.org/packages/RamiGO/ |
| Package Downloads Report | Download Stats |
Documentation »
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