- Home
- Bioconductor 3.0
- Software Packages
- Rmagpie
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Rmagpie")
In most cases, you don't need to download the package archive at all.
Rmagpie
|
This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see Rmagpie.
MicroArray Gene-expression-based Program In Error rate estimation
Bioconductor version: 3.0
Microarray Classification is designed for both biologists and statisticians. It offers the ability to train a classifier on a labelled microarray dataset and to then use that classifier to predict the class of new observations. A range of modern classifiers are available, including support vector machines (SVMs), nearest shrunken centroids (NSCs)... Advanced methods are provided to estimate the predictive error rate and to report the subset of genes which appear essential in discriminating between classes.
Author: Camille Maumet <Rmagpie at gmail.com>, with contributions from C. Ambroise J. Zhu
Maintainer: Camille Maumet <Rmagpie at gmail.com>
Citation (from within R,
enter citation("Rmagpie")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Rmagpie")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Rmagpie")
| R Script | Rmagpie Examples | |
| Reference Manual |
Details
| biocViews | Classification, Microarray, Software |
| Version | 1.22.0 |
| In Bioconductor since | BioC 2.4 (R-2.9) (7 years) |
| License | GPL (>= 3) |
| Depends | R (>= 2.6.1), Biobase(>= 2.5.5) |
| Imports | Biobase(>= 2.5.5), e1071, graphics, grDevices, kernlab, methods, pamr, stats, utils |
| LinkingTo | |
| Suggests | xtable |
| SystemRequirements | |
| Enhances | |
| URL | http://www.bioconductor.org/ |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | Rmagpie_1.22.0.tar.gz |
| Windows Binary | Rmagpie_1.22.0.zip |
| Mac OS X 10.6 (Snow Leopard) | Rmagpie_1.22.0.tgz |
| Mac OS X 10.9 (Mavericks) | Rmagpie_1.22.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/Rmagpie/tree/release-3.0 |
| Package Short Url | http://bioconductor.org/packages/Rmagpie/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
