To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SeqVarTools")

In most cases, you don't need to download the package archive at all.

SeqVarTools

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see SeqVarTools.

Tools for variant data

Bioconductor version: 3.0

An interface to the fast-access storage format for VCF data provided in SeqArray, with tools for common operations and analysis.

Author: Stephanie M. Gogarten, Xiuwen Zheng

Maintainer: Stephanie M. Gogarten <sdmorris at u.washington.edu>, Xiuwen Zheng <zhengx at u.washington.edu>

Citation (from within R, enter citation("SeqVarTools")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SeqVarTools")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SeqVarTools")

PDF	R Script	Introduction to SeqVarTools
PDF		Reference Manual

biocViews	GeneticVariability, Genetics, SNP, Sequencing, Software
Version	1.4.0
In Bioconductor since	BioC 2.13 (R-3.0) (2.5 years)
License	GPL-3
Depends	SeqArray(>= 1.1.1)
Imports	methods, GenomicRanges, IRanges, GWASExactHW
LinkingTo
Suggests	BiocGenerics, RUnit
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	SeqVarTools_1.4.0.tar.gz
Windows Binary	SeqVarTools_1.4.0.zip
Mac OS X 10.6 (Snow Leopard)	SeqVarTools_1.4.0.tgz
Mac OS X 10.9 (Mavericks)	SeqVarTools_1.4.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/SeqVarTools/tree/release-3.0
Package Short Url	http://bioconductor.org/packages/SeqVarTools/
Package Downloads Report	Download Stats

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