To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("asmn")

In most cases, you don't need to download the package archive at all.

asmn

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see asmn.

All sample mean normalization.

Bioconductor version: 3.0

Performs all sample mean normalization using raw data output from BeadStudio and MethyLumiM data.

Author: 'Anna Decker <deckera at berkeley.edu> [aut,cre], Paul Yousefi <yousefi at berkeley.edu> [aut,cre]'

Maintainer: Anna Decker <deckera at berkeley.edu>

Citation (from within R, enter citation("asmn")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("asmn")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("asmn")

PDF	R Script	Vignette for R package asmn
PDF		Reference Manual

biocViews	DNAMethylation, Preprocessing, QualityControl, Software, TwoChannel
Version	1.2.0
In Bioconductor since	BioC 2.14 (R-3.1) (2 years)
License	GPL-3
Depends	R (>= 3.0.2)
Imports	methylumi, stats, Biobase
LinkingTo
Suggests	TCGAMethylation450k, IlluminaHumanMethylation450k.db
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	asmn_1.2.0.tar.gz
Windows Binary	asmn_1.2.0.zip
Mac OS X 10.6 (Snow Leopard)	asmn_1.2.0.tgz
Mac OS X 10.9 (Mavericks)	asmn_1.2.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/asmn/tree/release-3.0
Package Short Url	http://bioconductor.org/packages/asmn/
Package Downloads Report	Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Please read the posting guide. Post questions about Bioconductor to one of the following locations: