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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("biomvRCNS")
In most cases, you don't need to download the package archive at all.
biomvRCNS
|
This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see biomvRCNS.
Copy Number study and Segmentation for multivariate biological data
Bioconductor version: 3.0
In this package, a Hidden Semi Markov Model (HSMM) and one homogeneous segmentation model are designed and implemented for segmentation genomic data, with the aim of assisting in transcripts detection using high throughput technology like RNA-seq or tiling array, and copy number analysis using aCGH or sequencing.
Author: Yang Du
Maintainer: Yang Du <yang.du at uni-rostock.de>
Citation (from within R,
enter citation("biomvRCNS")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("biomvRCNS")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("biomvRCNS")
| R Script | biomvRCNS package introduction | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | CopyNumberVariation, Genetics, Microarray, Sequencing, Software, Visualization, aCGH |
| Version | 1.6.0 |
| In Bioconductor since | BioC 2.12 (R-3.0) (3 years) |
| License | GPL (>= 2) |
| Depends | IRanges, GenomicRanges, Gviz |
| Imports | methods, mvtnorm |
| LinkingTo | |
| Suggests | cluster, parallel, GenomicFeatures, dynamicTreeCut, Rsamtools, TxDb.Hsapiens.UCSC.hg19.knownGene |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | biomvRCNS_1.6.0.tar.gz |
| Windows Binary | biomvRCNS_1.6.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | biomvRCNS_1.6.0.tgz |
| Mac OS X 10.9 (Mavericks) | biomvRCNS_1.6.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/biomvRCNS/tree/release-3.0 |
| Package Short Url | http://bioconductor.org/packages/biomvRCNS/ |
| Package Downloads Report | Download Stats |
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