To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("bsseq")
In most cases, you don't need to download the package archive at all.
This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see bsseq.
Bioconductor version: 3.0
Tools for analyzing and visualizing bisulfite sequencing data
Author: Kasper Daniel Hansen [aut, cre]
Maintainer: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>
Citation (from within R,
enter citation("bsseq")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("bsseq")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("bsseq")
R Script | Analyzing WGBS with bsseq | |
R Script | The bsseq user's guide | |
Reference Manual | ||
Text | NEWS |
biocViews | DNAMethylation, Software |
Version | 1.2.0 |
In Bioconductor since | BioC 2.11 (R-2.15) (3.5 years) |
License | Artistic-2.0 |
Depends | R (>= 2.15), methods, BiocGenerics, IRanges, GenomicRanges, parallel, matrixStats |
Imports | scales, stats, graphics, Biobase, locfit |
LinkingTo | |
Suggests | RUnit, bsseqData |
SystemRequirements | |
Enhances | |
URL | https://github.com/kasperdanielhansen/bsseq |
Depends On Me | bsseqData |
Imports Me | DSS |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | bsseq_1.2.0.tar.gz |
Windows Binary | bsseq_1.2.0.zip |
Mac OS X 10.6 (Snow Leopard) | bsseq_1.2.0.tgz |
Mac OS X 10.9 (Mavericks) | bsseq_1.2.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/bsseq/tree/release-3.0 |
Package Short Url | http://bioconductor.org/packages/bsseq/ |
Package Downloads Report | Download Stats |
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