To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("clippda")

In most cases, you don't need to download the package archive at all.

clippda

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see clippda.

A package for the clinical proteomic profiling data analysis

Bioconductor version: 3.0

Methods for the nalysis of data from clinical proteomic profiling studies. The focus is on the studies of human subjects, which are often observational case-control by design and have technical replicates. A method for sample size determination for planning these studies is proposed. It incorporates routines for adjusting for the expected heterogeneities and imbalances in the data and the within-sample replicate correlations.

Author: Stephen Nyangoma

Maintainer: Stephen Nyangoma <s.o.nyangoma at bham.ac.uk>

Citation (from within R, enter citation("clippda")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("clippda")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("clippda")

PDF	R Script	Sample Size Calculation
PDF		Reference Manual

Details

biocViews	DifferentialExpression, MultipleComparison, OneChannel, Preprocessing, Proteomics, Software
Version	1.16.0
In Bioconductor since	BioC 2.5 (R-2.10) (6.5 years)
License	GPL (>=2)
Depends	R (>= 2.13.1), limma, statmod, rgl, lattice, scatterplot3d, graphics, grDevices, stats, utils, Biobase, tools, methods
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL	http://www.cancerstudies.bham.ac.uk/crctu/CLIPPDA.shtml
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	clippda_1.16.0.tar.gz
Windows Binary	clippda_1.16.0.zip
Mac OS X 10.6 (Snow Leopard)	clippda_1.16.0.tgz
Mac OS X 10.9 (Mavericks)	clippda_1.16.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/clippda/tree/release-3.0
Package Short Url	http://bioconductor.org/packages/clippda/
Package Downloads Report	Download Stats

Documentation »

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