To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ibh")
In most cases, you don't need to download the package archive at all.
ibh
|
This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see ibh.
Interaction Based Homogeneity for Evaluating Gene Lists
Bioconductor version: 3.0
This package contains methods for calculating Interaction Based Homogeneity to evaluate fitness of gene lists to an interaction network which is useful for evaluation of clustering results and gene list analysis. BioGRID interactions are used in the calculation. The user can also provide their own interactions.
Author: Kircicegi Korkmaz, Volkan Atalay, Rengul Cetin Atalay.
Maintainer: Kircicegi Korkmaz <e102771 at ceng.metu.edu.tr>
Citation (from within R,
enter citation("ibh")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ibh")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ibh")
| R Script | ibh | |
| Reference Manual |
Details
| biocViews | DataImport, GraphAndNetwork, NetworkEnrichment, QualityControl, Software |
| Version | 1.14.0 |
| In Bioconductor since | BioC 2.8 (R-2.13) (5 years) |
| License | GPL (>= 2) |
| Depends | simpIntLists |
| Imports | |
| LinkingTo | |
| Suggests | yeastCC, stats |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | ibh_1.14.0.tar.gz |
| Windows Binary | ibh_1.14.0.zip |
| Mac OS X 10.6 (Snow Leopard) | ibh_1.14.0.tgz |
| Mac OS X 10.9 (Mavericks) | ibh_1.14.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/ibh/tree/release-3.0 |
| Package Short Url | http://bioconductor.org/packages/ibh/ |
| Package Downloads Report | Download Stats |
Documentation »
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