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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("matchBox")
In most cases, you don't need to download the package archive at all.
matchBox
|
This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see matchBox.
Utilities to compute, compare, and plot the agreement between ordered vectors of features (ie. distinct genomic experiments). The package includes Correspondence-At-the-TOP (CAT) analysis.
Bioconductor version: 3.0
The matchBox package enables comparing ranked vectors of features, merging multiple datasets, removing redundant features, using CAT-plots and Venn diagrams, and computing statistical significance.
Author: Luigi Marchionni <marchion at jhu.edu>, Anuj Gupta <Anuj Gupta <agupta52 at jhu.edu>
Maintainer: Luigi Marchionni <marchion at jhu.edu>, Anuj Gupta <Anuj Gupta <agupta52 at jhu.edu>
Citation (from within R,
enter citation("matchBox")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("matchBox")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("matchBox")
| R Script | Working with the matchBox package | |
| Reference Manual |
Details
| biocViews | Annotation, Microarray, MultipleComparison, Software, Visualization |
| Version | 1.8.0 |
| In Bioconductor since | BioC 2.11 (R-2.15) (3.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.8.0) |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | matchBox_1.8.0.tar.gz |
| Windows Binary | matchBox_1.8.0.zip |
| Mac OS X 10.6 (Snow Leopard) | matchBox_1.8.0.tgz |
| Mac OS X 10.9 (Mavericks) | matchBox_1.8.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/matchBox/tree/release-3.0 |
| Package Short Url | http://bioconductor.org/packages/matchBox/ |
| Package Downloads Report | Download Stats |
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