To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("mdqc")
In most cases, you don't need to download the package archive at all.
mdqc
|
This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see mdqc.
Mahalanobis Distance Quality Control for microarrays
Bioconductor version: 3.0
MDQC is a multivariate quality assessment method for microarrays based on quality control (QC) reports. The Mahalanobis distance of an array's quality attributes is used to measure the similarity of the quality of that array against the quality of the other arrays. Then, arrays with unusually high distances can be flagged as potentially low-quality.
Author: Justin Harrington
Maintainer: Gabriela Cohen-Freue <gcohen at mrl.ubc.ca>
Citation (from within R,
enter citation("mdqc")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("mdqc")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("mdqc")
| R Script | Introduction to MDQC | |
| Reference Manual |
Details
| biocViews | Microarray, QualityControl, Software |
| Version | 1.28.0 |
| In Bioconductor since | BioC 2.2 (R-2.7) (8 years) |
| License | LGPL (>= 2) |
| Depends | R (>= 2.2.1), cluster, MASS |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | arrayMvout |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | mdqc_1.28.0.tar.gz |
| Windows Binary | mdqc_1.28.0.zip |
| Mac OS X 10.6 (Snow Leopard) | mdqc_1.28.0.tgz |
| Mac OS X 10.9 (Mavericks) | mdqc_1.28.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/mdqc/tree/release-3.0 |
| Package Short Url | http://bioconductor.org/packages/mdqc/ |
| Package Downloads Report | Download Stats |
Documentation »
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