To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("metaMS")
In most cases, you don't need to download the package archive at all.
metaMS
|
This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see metaMS.
MS-based metabolomics annotation pipeline
Bioconductor version: 3.0
MS-based metabolomics data processing and compound annotation pipeline.
Author: Ron Wehrens [aut, cre] (author of GC-MS part), Pietro Franceschi [aut] (author of LC-MS part), Nir Shahaf [ctb], Matthias Scholz [ctb], Georg Weingart [ctb] (development of GC-MS approach), Elisabete Carvalho [ctb] (testing and feedback of GC-MS pipeline)
Maintainer: Ron Wehrens <ron.wehrens at gmail.com>
Citation (from within R,
enter citation("metaMS")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("metaMS")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("metaMS")
| R Script | runGC | |
| R Script | runLC | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | MassSpectrometry, Metabolomics, Software |
| Version | 1.2.0 |
| In Bioconductor since | BioC 2.14 (R-3.1) (2 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.10), methods, CAMERA, xcms(>= 1.35) |
| Imports | Matrix, tools, robustbase, BiocGenerics |
| LinkingTo | |
| Suggests | metaMSdata, RUnit |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | metaMS_1.2.0.tar.gz |
| Windows Binary | metaMS_1.2.0.zip |
| Mac OS X 10.6 (Snow Leopard) | metaMS_1.2.0.tgz |
| Mac OS X 10.9 (Mavericks) | metaMS_1.2.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/metaMS/tree/release-3.0 |
| Package Short Url | http://bioconductor.org/packages/metaMS/ |
| Package Downloads Report | Download Stats |
Documentation »
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