To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ontoCAT")

In most cases, you don't need to download the package archive at all.

ontoCAT

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see ontoCAT.

Ontology traversal and search

Bioconductor version: 3.0

The ontoCAT R package provides a simple interface to ontologies described in widely used standard formats, stored locally in the filesystem or accessible online. The full version of ontoCAT R package also supports searching for ontology terms across multiple ontologies and in major ontology repositories, as well as a number of advanced ontology navigation functions: www.ontocat.org/wiki/r

Author: Natalja Kurbatova, Tomasz Adamusiak, Pavel Kurnosov, Morris Swertz, Misha Kapushevsky

Maintainer: Natalja Kurbatova <natalja at ebi.ac.uk>

Citation (from within R, enter citation("ontoCAT")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ontoCAT")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ontoCAT")

PDF	R Script	ontoCAT package
PDF		Reference Manual
Text		LICENSE

Details

biocViews	Classification, DataRepresentation, Software
Version	1.18.0
In Bioconductor since	BioC 2.7 (R-2.12) (5.5 years)
License	Apache License 2.0
Depends	rJava, methods
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	RMassBank
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	ontoCAT_1.18.0.tar.gz
Windows Binary	ontoCAT_1.18.0.zip
Mac OS X 10.6 (Snow Leopard)	ontoCAT_1.18.0.tgz
Mac OS X 10.9 (Mavericks)	ontoCAT_1.18.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/ontoCAT/tree/release-3.0
Package Short Url	http://bioconductor.org/packages/ontoCAT/
Package Downloads Report	Download Stats

Documentation »

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