- Home
- Bioconductor 3.0
- Software Packages
- proteoQC
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("proteoQC")
In most cases, you don't need to download the package archive at all.
proteoQC
|
This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see proteoQC.
An R package for proteomics data quality control
Bioconductor version: 3.0
This package creates a HTML format QC report for MS/MS-based proteomics data. The report is intended to allow the user to quickly assess the quality of proteomics data.
Author: Bo Wen <wenbo at genomics.cn>, Laurent Gatto <lg390 at cam.ac.uk>
Maintainer: Bo Wen <wenbo at genomics.cn>
Citation (from within R,
enter citation("proteoQC")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("proteoQC")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("proteoQC")
| R Script | proteoQC tutorial | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | MassSpectrometry, Proteomics, QualityControl, ReportWriting, Software, Visualization |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (1.5 years) |
| License | LGPL-2 |
| Depends | R (>= 3.0.0), XML, VennDiagram, MSnbase |
| Imports | rTANDEM, plyr, seqinr, Nozzle.R1, ggplot2, reshape2, parallel, Rcpp (>= 0.11.1) |
| LinkingTo | Rcpp |
| Suggests | RforProteomics(>= 1.0.16), knitr, BiocStyle, rpx, R.utils, RUnit, BiocGenerics |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | proteoQC_1.2.0.tar.gz |
| Windows Binary | proteoQC_1.2.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | proteoQC_1.2.0.tgz |
| Mac OS X 10.9 (Mavericks) | proteoQC_1.2.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/proteoQC/tree/release-3.0 |
| Package Short Url | http://bioconductor.org/packages/proteoQC/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
