To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("qpgraph")

In most cases, you don't need to download the package archive at all.

qpgraph

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see qpgraph.

Estimation of genetic and molecular regulatory networks from high-throughput genomics data

Bioconductor version: 3.0

Procedures to estimate gene and eQTL networks from high-throughput expression and genotyping assays.

Author: R. Castelo and A. Roverato

Maintainer: Robert Castelo <robert.castelo at upf.edu>

Citation (from within R, enter citation("qpgraph")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("qpgraph")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("qpgraph")

PDF		BasicUsersGuide.pdf
PDF	R Script	Estimate eQTL networks using qpgraph
PDF	R Script	Reverse-engineer transcriptional regulatory networks using qpgraph
PDF	R Script	Simulating molecular regulatory networks using qpgraph
PDF		Reference Manual
Text		NEWS

biocViews	GeneExpression, GeneRegulation, GeneticVariability, Genetics, GraphAndNetwork, Microarray, NetworkInference, Pathways, SNP, Software, Transcription
Version	2.0.5
In Bioconductor since	BioC 2.4 (R-2.9) (7 years)
License	GPL (>= 2)
Depends	R (>= 3.0.0)
Imports	methods, parallel, Matrix (>= 1.0), grid, annotate, graph(>= 1.44.0), Biobase, S4Vectors, BiocParallel, AnnotationDbi, IRanges, GenomeInfoDb, GenomicRanges, GenomicFeatures, mvtnorm, qtl, Rgraphviz
LinkingTo
Suggests	RUnit, BiocGenerics, BiocStyle, genefilter, org.EcK12.eg.db, rlecuyer, snow, Category, GOstats
SystemRequirements
Enhances
URL	http://functionalgenomics.upf.edu/qpgraph
Depends On Me
Imports Me	clipper
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	qpgraph_2.0.5.tar.gz
Windows Binary	qpgraph_2.0.5.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	qpgraph_2.0.5.tgz
Mac OS X 10.9 (Mavericks)	qpgraph_2.0.5.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/qpgraph/tree/release-3.0
Package Short Url	http://bioconductor.org/packages/qpgraph/
Package Downloads Report	Download Stats

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