To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("shinyMethyl")

In most cases, you don't need to download the package archive at all.

shinyMethyl

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see shinyMethyl.

Interactive visualization for Illumina's 450k methylation arrays

Bioconductor version: 3.0

Interactive tool for visualizing Illumina's 450k array data

Author: Jean-Philippe Fortin [cre, aut], Kasper Daniel Hansen [aut]

Maintainer: Jean-Philippe Fortin <jfortin at jhsph.edu>

Citation (from within R, enter citation("shinyMethyl")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("shinyMethyl")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("shinyMethyl")

PDF	R Script	shinyMethyl: interactive visualization of Illumina 450K methylation arrays
PDF		Reference Manual
Text		NEWS

biocViews	DNAMethylation, Microarray, Preprocessing, QualityControl, Software, TwoChannel
Version	1.0.2
In Bioconductor since	BioC 3.0 (R-3.1) (1.5 years)
License	Artistic-2.0
Depends	methods, BiocGenerics(>= 0.3.2), shiny (>= 0.9.1), minfi(>= 1.6.0), IlluminaHumanMethylation450kmanifest, matrixStats, R (>= 3.0.0)
Imports	RColorBrewer
LinkingTo
Suggests	shinyMethylData, minfiData, BiocStyle, RUnit, digest, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	shinyMethyl_1.0.2.tar.gz
Windows Binary	shinyMethyl_1.0.2.zip
Mac OS X 10.6 (Snow Leopard)	shinyMethyl_1.0.2.tgz
Mac OS X 10.9 (Mavericks)	shinyMethyl_1.0.2.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/shinyMethyl/tree/release-3.0
Package Short Url	http://bioconductor.org/packages/shinyMethyl/
Package Downloads Report	Download Stats

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