To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("sigaR")
In most cases, you don't need to download the package archive at all.
sigaR
|
This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see sigaR.
statistics for integrative genomics analyses in R
Bioconductor version: 3.0
Facilites the joint analysis of high-throughput data from multiple molecular levels. Contains functions for manipulation of objects, various analysis types, and some visualization.
Author: Wessel N. van Wieringen <w.vanwieringen at vumc.nl>
Maintainer: Wessel N. van Wieringen <w.vanwieringen at vumc.nl>
Citation (from within R,
enter citation("sigaR")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("sigaR")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("sigaR")
| R Script | sigaR | |
| Reference Manual |
Details
| biocViews | DifferentialExpression, GeneExpression, Microarray, Pathways, Software, aCGH |
| Version | 1.10.0 |
| In Bioconductor since | BioC 2.10 (R-2.15) (4 years) |
| License | GPL (>= 2) |
| Depends | Biobase, CGHbase, methods, mvtnorm, penalized |
| Imports | corpcor (>= 1.6.2), graphics, igraph, marray, MASS, mvtnorm, quadprog, penalized (>= 0.9-39), snowfall, stats |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | http://www.few.vu.nl/~wvanwie |
| Depends On Me | HCsnip |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | sigaR_1.10.0.tar.gz |
| Windows Binary | sigaR_1.10.0.zip |
| Mac OS X 10.6 (Snow Leopard) | sigaR_1.10.0.tgz |
| Mac OS X 10.9 (Mavericks) | sigaR_1.10.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/sigaR/tree/release-3.0 |
| Package Short Url | http://bioconductor.org/packages/sigaR/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
