- Home
- Bioconductor 3.0
- Experiment Packages
- GSBenchMark
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GSBenchMark")
In most cases, you don't need to download the package archive at all.
GSBenchMark
|
This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see GSBenchMark.
Gene Set Benchmark
Bioconductor version: 3.0
Benchmarks for Machine Learning Analysis of the Gene Sets. The package contains a list of pathways and gene expression data sets used in "Identifying Tightly Regulated and Variably Expressed Networks by Differential Rank Conservation (DIRAC)" (2010) by Eddy et al.
Author: Bahman Afsari <bahman at jhu.edu>, Elana J. Fertig <ejfertig at jhmi.edu>
Maintainer: Bahman Afsari <bahman at jhu.edu>
Citation (from within R,
enter citation("GSBenchMark")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GSBenchMark")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GSBenchMark")
| R Script | Working with the GSBenchMark package | |
| Reference Manual |
Details
| biocViews | ExperimentData, GeneExpression, GeneRegulation, Microarray, Pathways |
| Version | 1.0.0 |
| License | GPL-2 |
| Depends | R (>= 2.13.1) |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | GSReg |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | GSBenchMark_1.0.0.tar.gz |
| Windows Binary | GSBenchMark_1.0.0.zip |
| Mac OS X 10.6 (Snow Leopard) | GSBenchMark_1.0.0.tgz |
| Mac OS X 10.9 (Mavericks) | GSBenchMark_1.0.0.tgz |
| Subversion source | (username/password: readonly) |
| Package Short Url | http://bioconductor.org/packages/GSBenchMark/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
