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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("lumiBarnes")
In most cases, you don't need to download the package archive at all.
lumiBarnes
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This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see lumiBarnes.
Barnes Benchmark Illumina Tissues Titration Data
Bioconductor version: 3.0
The Barnes benchmark dataset can be used to evaluate the algorithms for Illumina microarrays. It measured a titration series of two human tissues, blood and placenta, and includes six samples with the titration ratio of blood and placenta as 100:0, 95:5, 75:25, 50:50, 25:75 and 0:100. The samples were hybridized on HumanRef-8 BeadChip (Illumina, Inc) in duplicate. The data is loaded as an LumiBatch Object (see documents in the lumi package).
Author: Pan Du
Maintainer: Pan Du <dupan at northwestern.edu>
Citation (from within R,
enter citation("lumiBarnes")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("lumiBarnes")
Documentation
| Reference Manual |
Details
| biocViews | ExperimentData, NormalTissue, OneChannel, RNAExpressionData |
| Version | 1.5.1 |
| License | LGPL |
| Depends | R (>= 2.0), Biobase(>= 2.5.5), lumi(>= 1.1.0) |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | arrayMvout, lumi |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | lumiBarnes_1.5.1.tar.gz |
| Windows Binary | lumiBarnes_1.5.1.zip |
| Mac OS X 10.6 (Snow Leopard) | lumiBarnes_1.5.1.tgz |
| Mac OS X 10.9 (Mavericks) | lumiBarnes_1.5.1.tgz |
| Subversion source | (username/password: readonly) |
| Package Short Url | http://bioconductor.org/packages/lumiBarnes/ |
| Package Downloads Report | Download Stats |
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