BioNetStat

DOI: 10.18129/B9.bioc.BioNetStat    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see BioNetStat.

Biological Network Analysis

Bioconductor version: 3.10

A package to perform differential network analysis, differential node analysis (differential coexpression analysis), network and metabolic pathways view. The reference paper is avaible in https://doi.org/10.3389/fgene.2019.00594.

Author: Vinícius Jardim, Suzana Santos, André Fujita, and Marcos Buckeridge

Maintainer: Vinicius Jardim <viniciusjc at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BioNetStat")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BioNetStat")

 

HTML		1. Line command tutorial
HTML		2. Interface tutorial
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialExpression, GeneExpression, GeneSetEnrichment, GraphAndNetwork, ImmunoOncology, Metabolomics, Microarray, Network, NetworkInference, Pathways, Proteomics, RNASeq, Sequencing, Software, SystemsBiology
Version	1.6.0
In Bioconductor since	BioC 3.7 (R-3.5) (2 years)
License	GPL (>= 3)
Depends	R (>= 3.5), shiny, igraph, shinyBS, pathview
Imports	BiocParallel, RJSONIO, whisker, yaml, pheatmap, ggplot2, plyr, utils, stats, RColorBrewer, Hmisc, psych, knitr
LinkingTo
Suggests
SystemRequirements
Enhances
URL	http://github.com/jardimViniciusC/BioNetStat
BugReports	http://github.com/jardimViniciusC/BioNetStat/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BioNetStat_1.6.0.tar.gz
Windows Binary	BioNetStat_1.6.0.zip
Mac OS X 10.11 (El Capitan)	BioNetStat_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/BioNetStat
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/BioNetStat
Package Short Url	https://bioconductor.org/packages/BioNetStat/
Package Downloads Report	Download Stats