REBET

DOI: 10.18129/B9.bioc.REBET    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see REBET.

The subREgion-based BurdEn Test (REBET)

Bioconductor version: 3.10

There is an increasing focus to investigate the association between rare variants and diseases. The REBET package implements the subREgion-based BurdEn Test which is a powerful burden test that simultaneously identifies susceptibility loci and sub-regions.

Author: Bill Wheeler [cre], Bin Zhu [aut], Lisa Mirabello [ctb], Nilanjan Chatterjee [ctb]

Maintainer: Bill Wheeler <wheelerb at imsweb.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("REBET")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("REBET")

 

PDF	R Script	REBET Vignette
PDF		Reference Manual
Text		NEWS

Details

biocViews	SNP, Software, VariantAnnotation
Version	1.4.0
In Bioconductor since	BioC 3.8 (R-3.5) (1.5 years)
License	GPL-2
Depends	ASSET
Imports	stats, utils
LinkingTo
Suggests	RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	REBET_1.4.0.tar.gz
Windows Binary	REBET_1.4.0.zip
Mac OS X 10.11 (El Capitan)	REBET_1.4.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/REBET
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/REBET
Package Short Url	https://bioconductor.org/packages/REBET/
Package Downloads Report	Download Stats