HarmonizedTCGAData

DOI: 10.18129/B9.bioc.HarmonizedTCGAData    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see HarmonizedTCGAData.

Processed Harmonized TCGA Data of Five Selected Cancer Types

Bioconductor version: 3.10

This package contains the processed harmonized TCGA data of five cancer types used in "Tianle Ma and Aidong Zhang, Integrate Multi-omic Data Using Affinity Network Fusion (ANF) for Cancer Patient Clustering".

Author: Tianle Ma

Maintainer: Tianle Ma <tianlema at buffalo.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HarmonizedTCGAData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HarmonizedTCGAData")

 

HTML	R Script	Patient Affinity Matrices Derived from Harmonized TCGA Dataset
PDF		Reference Manual
Text		NEWS

Details

biocViews	CancerData, ExperimentData, ReproducibleResearch
Version	1.8.0
License	GPL-3
Depends	R (>= 3.4.0)
Imports	ExperimentHub
LinkingTo
Suggests	AnnotationHub, knitr, rmarkdown, igraph, survival, ANF, stats, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	HarmonizedTCGAData_1.8.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/HarmonizedTCGAData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/HarmonizedTCGAData
Package Short Url	https://bioconductor.org/packages/HarmonizedTCGAData/
Package Downloads Report	Download Stats